PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 903921
Common NameARALYDRAFT_903921
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 241aa    MW: 26793.6 Da    PI: 5.4184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
903921genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19105155255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  903921 105 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLRG 155
             59*******.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-37105169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32105164IPR001471AP2/ERF domain
CDDcd000188.23E-31105165No hitNo description
SuperFamilySSF541713.07E-23105164IPR016177DNA-binding domain
PROSITE profilePS5103224.105105163IPR001471AP2/ERF domain
PfamPF008473.6E-13106155IPR001471AP2/ERF domain
PRINTSPR003672.0E-13106117IPR001471AP2/ERF domain
PRINTSPR003672.0E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSGFEYSDSL SSSDSVNNGV NSRMFFRNPS FSNVILNDNW SDLPLSVDDS QDMAIYNTLR  60
DAVSSGWTPS VPPVTSPAEE VSVRGEEKPP ATASGSHAPR QKGMQYRGVR RRPWGKFAAE  120
IRDPKKNGAR VWLGTYETPE DAAVAYDRAA FQLRGSKAKL NFPHLIGSCK YEPVRIRPRR  180
RSPEPSVSDQ LTSEQKRESH VDDGESILVV PELDFTVDQF YFDGSLLMDQ SECSYSGNRT  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-31102168268ATERF1
3gcc_A1e-31102168268ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00311DAPTransfer from AT2G44840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023880.0AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAF3250890.0AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBankAF3705400.0AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0724710.0AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880142.11e-179hypothetical protein ARALYDRAFT_903921
SwissprotQ8L9K11e-160ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLD7LBS81e-178D7LBS8_ARALL; Putative uncharacterized protein
STRINGscaffold_403422.11e-178(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-137ethylene-responsive element binding factor 13